Ecology and Environment ›› 2024, Vol. 33 ›› Issue (10): 1580-1589.DOI: 10.16258/j.cnki.1674-5906.2024.10.010
• Research Article [Environmental Science] • Previous Articles Next Articles
LIU Sujie1,2,3(), LIU Chuanping3, FANG Liping3, CHEN Guanhong3,*(
), LI Fangbai3
Received:
2024-02-15
Online:
2024-10-18
Published:
2024-11-15
Contact:
CHEN Guanhong
刘苏杰1,2,3(), 刘传平3, 方利平3, 陈冠虹3,*(
), 李芳柏3
通讯作者:
陈冠虹
作者简介:
刘苏杰(1998年生),男,硕士研究生,研究方向为土壤砷污染控制。E-mail: liusujie21@mails.ucas.ac.cn
基金资助:
CLC Number:
LIU Sujie, LIU Chuanping, FANG Liping, CHEN Guanhong, LI Fangbai. Arsenic Methylation Process and the Associated Microbial Mechanisms in Paddy Soil Butyrate-degrading Methanogenic Communities[J]. Ecology and Environment, 2024, 33(10): 1580-1589.
刘苏杰, 刘传平, 方利平, 陈冠虹, 李芳柏. 水稻土丁酸互营产甲烷菌群的砷甲基化特征及机制解析[J]. 生态环境学报, 2024, 33(10): 1580-1589.
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URL: https://www.jeesci.com/EN/10.16258/j.cnki.1674-5906.2024.10.010
组分 | 量值 | 单位 |
---|---|---|
1,4-哌嗪二乙磺酸 (PIPES) | 3.024 | g·L−1 |
NH4Cl | 0.535 | g·L−1 |
NaHCO3 | 0.420 | g·L−1 |
KH2PO4 | 0.136 | g·L−1 |
MgCl2·6H2O | 0.1017 | g·L−1 |
CaCl2 | 0.055 | g·L−1 |
维生素溶液 | 1 | mL·L−1 |
微量元素溶液 | 1 | mL·L−1 |
超纯水 | 1 | L·L−1 |
pH | 7.0 | ‒ |
Table 1 The component of medium used in this study
组分 | 量值 | 单位 |
---|---|---|
1,4-哌嗪二乙磺酸 (PIPES) | 3.024 | g·L−1 |
NH4Cl | 0.535 | g·L−1 |
NaHCO3 | 0.420 | g·L−1 |
KH2PO4 | 0.136 | g·L−1 |
MgCl2·6H2O | 0.1017 | g·L−1 |
CaCl2 | 0.055 | g·L−1 |
维生素溶液 | 1 | mL·L−1 |
微量元素溶液 | 1 | mL·L−1 |
超纯水 | 1 | L·L−1 |
pH | 7.0 | ‒ |
目的基因 | 引物名称 | 引物序列 (5'-3') | 长度/bp | 扩增程序 | 参考文献 |
---|---|---|---|---|---|
细菌16S rRNA | 515F | GTGYCAGCMGCCGCGGTAA | 280 | 95 ℃ 30 s; 94 ℃ 20 s, 55 ℃ 20 s, 72 ℃ 30 s, 40个循环 | Einen et al., |
806R | GGACTACNVGGGTWTCTAAT | ||||
古菌16S rRNA | Arch519F | CAGCCGCCGCGGTAA | 400 | 95 ℃ 30 s; 95 ℃ 30 s, 57 ℃ 30 s, 72 ℃ 50 s, 40个循环 | Coolen et al., |
Arch915R | GTGCTCCCCCGCCAATTCCT | ||||
arsM | arsMF1 | TCYCTCGGCTGCGGCAAYCCVAC | 350 | 95 ℃ 30 s; 95 ℃ 30 s, 57 ℃ 30 s, 72 ℃ 1 min, 40个循环 | Jia et al., |
arsMR2 | CGWCCGCCWGGCTTWAGYACCCG | ||||
mcrA | mlas-mod-F | GGYGGTGTMGGDTTCACMCARTA | 469 | 95 ℃ 30 s; 95 ℃ 15 s, 58 ℃ 30 s, 72 ℃ 30 s, 40个循环 | Angel et al., |
mcrA-rev-R | CGTTCATBGCGTAGTTVGGRTAGT |
Table 2 Lists of primer pairs and thermal cycling parameters for real-time quantitative PCR
目的基因 | 引物名称 | 引物序列 (5'-3') | 长度/bp | 扩增程序 | 参考文献 |
---|---|---|---|---|---|
细菌16S rRNA | 515F | GTGYCAGCMGCCGCGGTAA | 280 | 95 ℃ 30 s; 94 ℃ 20 s, 55 ℃ 20 s, 72 ℃ 30 s, 40个循环 | Einen et al., |
806R | GGACTACNVGGGTWTCTAAT | ||||
古菌16S rRNA | Arch519F | CAGCCGCCGCGGTAA | 400 | 95 ℃ 30 s; 95 ℃ 30 s, 57 ℃ 30 s, 72 ℃ 50 s, 40个循环 | Coolen et al., |
Arch915R | GTGCTCCCCCGCCAATTCCT | ||||
arsM | arsMF1 | TCYCTCGGCTGCGGCAAYCCVAC | 350 | 95 ℃ 30 s; 95 ℃ 30 s, 57 ℃ 30 s, 72 ℃ 1 min, 40个循环 | Jia et al., |
arsMR2 | CGWCCGCCWGGCTTWAGYACCCG | ||||
mcrA | mlas-mod-F | GGYGGTGTMGGDTTCACMCARTA | 469 | 95 ℃ 30 s; 95 ℃ 15 s, 58 ℃ 30 s, 72 ℃ 30 s, 40个循环 | Angel et al., |
mcrA-rev-R | CGTTCATBGCGTAGTTVGGRTAGT |
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